PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.05H52
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 488aa    MW: 54058.1 Da    PI: 9.1051
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.05H52genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-056082123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C k F r  nL+ H r H
  Aradu.05H52 60 FVCEICLKGFQRDQNLQLHRRGH 82
                 89*******************88 PP

2zf-C2H212.80.00036136158123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+ k H +t+
  Aradu.05H52 136 WKCDKCSKRYAVQSDWKAHSKTC 158
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.02E-55982No hitNo description
Gene3DG3DSA:3.30.160.601.9E-45982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.3056082IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-4124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.02E-5131156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDDGEVSNAA FPLHHNNQTH HPTSNNPPPL KRKRNLPGNP DPEAEVIALS PKTLMATNRF  60
VCEICLKGFQ RDQNLQLHRR GHNLPWKLKQ RTTKEVRKRV YVCPEKSCVH NHPSRALGDL  120
TGIKKHFCRK HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT REYKCDCGTI FSRRDSFITH  180
RAFCDALAEE TARVNAASTI NHTLLGANNI AYTLMQQQNH HPLVPNNMST HFSSIFKPIS  240
SSTTDEISSN SQTSSRPLSL WNMGHHPHDT TTIMPITHNN LHDIHHQIGF ATNPPPPSIW  300
MFGNKHPSNG SQQEIITSTT SANSLPLMNI VKNNNNNNNS NNNNNNNHVA NQLVSVPSLY  360
STQHQSHDHD QTTTTSSSAA NMSATALLQK AAQIGSTSST DPSSFLGSIG LKCSNNNNQG  420
QDGNNKFCGI YSSSWSEPES STGDLTQMPP TKRMRVQNED GSAGGQTRDF LGVGVQTICH  480
PSSITGWI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015936325.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9ZWA61e-149IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLI1M3P40.0I1M3P4_SOYBN; Uncharacterized protein
TrEMBLV7BV210.0V7BV21_PHAVU; Uncharacterized protein
STRINGGLYMA13G36960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-138C2H2 family protein